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Marlovits Group

Structural and Systems Biology of Bacteria

Prof. Dr. Thomas Marlovits

Group Leader

+49 40 8998 87650
thomas.marlovits@cssb-hamburg.de

Home Institute

University Medical Center Hamburg-Eppendorf
www.uke.de

The Marlovits group studies the structural basis for assembly, regulation, and function of transmembrane molecular machines. We use a multidisciplinary approach, by combining molecular biology, genetic, cellular, biochemical, and a wide-range of structural (EM, X-ray, NMR, X-linking/mass spectrometry) tools.

Research Projects

Molecular Machines in Action
A fundamental property of many biological processes is that they are performed by highly organized, multicomponent macromolecular assemblies, often referred to as molecular machines. The Marlovits group studies the structural basis for assembly, regulation, and function of transmembrane molecular machines. We use a multidisciplinary approach, by combining molecular biology, genetic, cellular, biochemical, and a wide-range of structural (EM, X-ray, NMR, X-linking/mass spectrometry) tools. We are developing novel imaging and modeling technologies to visualize dynamic molecular processes in unprecedented detail in situ and in action.

Microbial Pathogenesis
Gram-negative pathogens such as Yersinia, Shigella, Pseudomonas, enteropathogenic/enterohemorrhagic E. coli (EPEC/EHEC) and Salmonella are the causative agents for many diseases known to both animals and humans. These pathogens often originate as foodborne diseases and result in outcomes ranging from a mild stomach ache to death. Central to the pathogenicity are bacterial toxins ('effectors'), which are delivered via the type III secretion system, a large membrane embedded machinery, from the bacterium to its host cell. Once delivered, these translocated effector proteins have the remarkable capacity to modulate various host-cell pathways that induce membrane ruffling and subsequently make the host accessible to bacterial infection.

Type III secretion system: Unfolded protein transport across membranes
Our recent structural analysis (Schraidt & Marlovits, Science 2010) of the injectisome, the most prominent, cylindrical structure of the type III secretion system, revealed a potential secretion path through the central part of the membrane embedded complex. However, the inner diameter of this path is too small to accommodate a fully folded effector protein, suggesting that either the injectisome must undergo large conformational changes during transport or the effector proteins need to be unfolded.

To investigate the type III secretion of human pathogens, we focused (1) on determining the secretion path of injectisomes, (2) on understanding the mechanism of transport, and (3) on visualizing protein transport in situ. We discovered that substrates are inserted into the secretion path in a polar fashion - N-terminal regions first – and that they are transported in an unfolded state. To understand, whether such a behaviour is in fact observed in situ, we analszed protein transport across membranes in a near-native state using cryo electron tomography (Radics et al 2014). For the first time, we were able to visualize pathogenic type III secretion systems in action.

Technology Development - Atomic structure determination from lower resolution cryo-EM maps
Direct electron detectors are key to the recent revolution in structural biology and have made it possible to generate electron density maps at near atomic resolution using cryo electron microscopy from non-crystalline sample material. However, building accurate models into these 3-5Å maps remains a challenge. We recently developed a new modeling approach that integrates Monte Carlo optimization with local density guided moves, Rosetta all-atom refinement, and real space B-factor fitting, thus yielding accurate models from experimental maps for three different systems with resolutions as low as 4.5Å (DiMaio et al Nature Methods 2015). Based on increasing need within the scientific community, we expanded this work by developing easy-to -use modeling tools which build accurate models at the highest possible resolution from single particle electron microscopy maps.

FUTURE PROJECTS AND GOALS

By understanding the molecular mechanism of TTSS-mediated protein transport at the highest possible resolution, we hope to provide a basis for the development of novel therapeutic strategies that will either inhibit its activity or modify the system for targeted drug delivery.

Header Image: Copyright HZI

Research Team

9

Group Leader

Prof. Dr. Thomas Marlovits
Phone:+49 40 8998 87650

E-Mail

Dirk Fahrenkamp
Phone:+49 40 8998 7657

E-Mail

Barbara Grüter
Phone:+49 40 8998 87657

E-Mail

Vadim Kotov
Phone:+49 40 8998 87654

E-Mail

Wolfgang Lugmayr
Phone:+49 40 8998 87652

E-Mail

Sean Miletic
Phone:+49 40 8998 87654

E-Mail

Maurice Pantel
Phone:+49 40 8998 87657

E-Mail

Oliver Vesper
Phone:+49 40 8998 87653

E-Mail

Jirka Wald
Phone:+49 40 8998 87655

E-Mail

Publications

2019

Wald J, Pasin M, Richter M, Walther CH, Mathai N, Kirchmair J, Makarov VA, Gössweiner-Mohr N, Marlovits TC, Zanella I, Real-Hohn A, Verdaguer N, Blaas D, Schmidtke M. Cryo-EM Structure of Pleconaril-Resistant Rhinovirus-B5 Complexed to the Antiviral OBR-5-340 Reveals Unexpected Binding Site. PNAS (in press)

Kotov V, Bartels K, Veith K, Josts I, Subhramanyam UKT, Günther C, Labahn J, Marlovits TC, Moraes I, Tidow H, Löw C, Garcia-Alai MM (2019) High-throughput stability screening for detergent-solubilized membrane proteins. Sci Rep. 2019 Jul 17;9(1):10379. doi: 10.1038/s41598-019-46686-8.

Guo EZ, Desrosiers DC, Zalesak J, Tolchard J, Berbon M, Habenstein B, Marlovits T, Loquet A, Galán JE (2019) A polymorphic helix of a Salmonella needle protein relays signals defining distinct steps in type III secretion. PLoS Biol. 2019 Jul 1;17(7):e3000351. doi: 10.1371/journal.pbio.3000351

2017

Beckham KSH, Ciccarelli L., Bunduc CM, Mertens HDT, Ummels R, Lugmayr L, Mayr J, Rettel M, Savitski MM, Svergun DI, Bitter W, Wilmanns M, Marlovits TC*, Parret AHA*, Houben ENG* (2017). Structure of a mycobacterial type VII secretion system membrane complex. Nature Microbiology 10;2:17047. doi: 10.1038/nmicrobiol.2017.47.

Song M , Sukovich DJ, Ciccarelli L, Mayr J, Fernandez-Rodriguez J, Mirsky EA, Tucker AC, Gordon DB, Marlovits TC, Voigt CA (2017) Control of type III protein secretion using a minimal genetic system. Nature communications 9;8:14737. doi: 10.1038/ncomms14737.

2016

Smaldone G, Pirone L, Pedone E, Marlovits T, Vitagliano L, Ciccarelli L. (2016) The BTB domains of the potassium channel tetramerization domain proteins prevalently assume pentameric states. FEBS Lett. 590:1663-71

2015

DiMaio F, Song Y, Li X, Brunner MJ,  Xu C, Conticello V, Egelman E, Marlovits TC, Cheng Y, Baker D* (2015) Atomic accuracy models from 4.5 Å cryo-electron microscopy data with density-guided iterative local rebuilding and refinement. Nature Methods 12:361-5

2014

Galan JE*,  Lara-Tejero, M, Marlovits TC, Wagner S. (2014) Bacterial type III secretion systems: specialized nanomachines for protein delivery into target cells. Ann Rev Microbiology 68:415-38

Hornung P, Troc P, Malvezzi F, Maier M, Demianova Z, Zimniak T, Litos G, Lampert F, Schleiffer A, Brunner M, Mechtler K, Herzog F, Marlovits TC, Westermann S.* (2014)

A cooperative mechanism drives budding yeast kinetochore assembly downstream of CENP-A.J Cell Biol 206:509-24

Radics J, Königsmaier L, Marlovits TC* (2014) Structure of a pathogenic type 3 secretion system in action. Nature Structural & Molecular Biology   21:82-7 (doi:10.1038/nsmb.2722)

   - Highlighted as Cover in NSMB

Brunner MJ, Fronzes R.*, Marlovits TC* (2014). Envelope spanning secretion systems in Gram-negative bacteria. In: Bacterial Membranes: Structural and Molecular Biology Fronzes R. (eds)

2013

Simunovic M, Mim C, Marlovits TC, Resch G, Unger VM, Voth* GA (2013) Protein-mediated transformation of lipid vesicles into tubular networks. Biophys J 105(3):711-9 - Highlighted as Cover in Biophys J

2012

Fernandez-Rodriguez J, Marlovits TC* (2012) Induced heterdimerization and purification of two target proteins by a synthetic coiled-coil tag Protein Science 21(4):511-9     -  Highlighted, Protein Science, 21, (2012)

Kosarewicz A, Königsmaier L, Marlovits TC* (2012) The blueprint of the Type-3 Injectisome. Phil Trans Royal Society  B 367:1140-54

2011

Schraidt O, Marlovits TC* (2011) Three-dimensional model of Salmonella’s Needle Complex at Subnanometer Resolution. Science 331:1192-95

   - Perspectives, Science, 331:1147-1148

   - This week in Science: Science 331:1109

Khan AG, Pickl-Herk A, Gajdzik L, Marlovits TC, Fuchs R, Blaas D* (2011) Entry of a heparan sulphate-binding HRV8 variant strictly depends on dynamin but not on clathrin, caveolin, and flotillin. Virology  30;412(1):55-67

2010

Galkin VE, Schmied WH, Schraidt O, Marlovits TC*, Egelman EH* (2010) The structure of the Salmonella typhimurium type III secretion system needle shows divergence from the flagellar system. J Mol Biol. 396(5):1392-7

Khan AG, Pickl-Herk A, Gajdzik L, Marlovits TC, Fuchs R, Blaas D* (2010) Human rhinovirus 14 enters rhabdomyosarcoma cells expressing icam-1 by a clathrin-, caveolin-, and flotillin-independent pathway. J Virol. 84(8):3984-92

Marlovits TC*, Stebbins CE* (2010) Type III secretion systems shape up as they ship out. Curr Opin Microbiol. 13(1):47-52

 

Schraidt O, Lefebre MD, Brunner MJ, Schmied WH, Schmidt A, Radics J, Mechtler K, Galán JE, Marlovits TC* (2010) Topology and organization of the Salmonella typhimurium type III secretion needle complex components. PloS Pathog. 6(4):e1000824

Wagner S, Königsmaier L, Lara-Tejero M, Lefebre M, Marlovits TC*, Galán JE* (2010) Organization and coordinated assembly of the type III secretion export apparatus. Proc Natl Acad Sci U S A. 107(41):17745-50

2006

Marlovits TC, Kubori T, Lara-Tejero M, Thomas D, Unger VM, Galán JE* (2006) Assembly of the inner rod determines needle length in the type III secretion injectisome. Nature. 441(7093):637-40

2004

Marlovits TC, Kubori T, Sukhan A, Thomas DR, Galán JE, Unger VM* (2004) Structural insights into the assembly of the type III secretion needle complex. Science. 306(5698):1040-2 - This week in Science: Science 306:937)

2002

Marlovits TC, Haase W, Herrmann C, Aller SG, Unger VM* (2002) The membrane protein FeoB contains an intramolecular G protein essential for Fe(II) uptake in bacteria. Proc Natl Acad Sci U S A. 99(25):16243-8

   - Editor’s choice in Science Signalling Sci. Is FeoB the Missing Link in GPCR Evolution?

2000

Ronacher B, Marlovits TC, Moser R, Blaas D* (2000) Expression and folding of human very-low-density lipoprotein receptor fragments: neutralization capacity toward human rhinovirus HRV2. Virology. 278(2):541-50

Hewat EA, Neumann E, Conway JF, Moser R, Ronacher B, Marlovits TC, Blaas D* (2000) The cellular receptor to human rhinovirus 2 binds around the 5-fold axis and not in the canyon: a structural view. EMBO J. 19(23):6317-25

1999

Verdaguer N, Marlovits TC, Bravo J, Stuart DI, Blaas D, Fita I* (1999) Crystallization and preliminary X-ray analysis of human rhinovirus serotype 2 (HRV2). Acta Crystallogr D Biol Crystallogr. 55(Pt 8):1459-61

1998

Hewat EA, Marlovits TC, Blaas D* (1998) Structure of a neutralizing antibody bound monovalently to human rhinovirus 2. J Virol. 72(5):4396-402

Marlovits TC, Abrahamsberg C, Blaas D* (1998) Very-low-density lipoprotein receptor fragment shed from HeLa cells inhibits human rhinovirus infection. J Virol. 72(12):10246-50

Marlovits TC, Abrahamsberg C, Blaas D* (1998) Soluble LDL minireceptors. Minimal structure requirements for recognition of minor group human rhinovirus. J Biol Chem. 273(50):33835-40

Marlovits TC, Zechmeister T, Gruenberger M, Ronacher B, Schwihla H, Blaas D* (1998) Recombinant soluble low density lipoprotein receptor fragment inhibits minor group rhinovirus infection in vitro. FASEB J. 12(9):695-703

Marlovits TC, Zechmeister T, Schwihla H, Ronacher B, Blaas D* (1998) Recombinant soluble low-density lipoprotein receptor fragment inhibits common cold infection. J Mol Recognit. 11(1-6):49-51

1995

Ayasse M*, Marlovits T, Tengö J, Taghizadeh T, Francke W (1995) Are there pheromonal dominance signals in the bumblebee Bombus hypnorum L. (Hymenoptera, Apidae). Apidologie. 26:163-180